Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82542961_82543666_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

82542961 - 82543666

Intron Length:

706

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAATTTTG

5'SS Class:

major

3'SS Sequence:

TTTATTTCCTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CTCTCTTTATTT

Flanking Amino Acid:

NRPFQTTIPHGKIQRDGKKP

Intron Amino Acid Position:

294

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

73.4

38.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

81.9

0.72

0.7

81.6

30.2

Minor 5ss

-0.6

2.8

55.2

43.4

Minor BPS

62.4

0.47

1.6

74.81

43.2

Associated Gene:

Gene:

STXBP5L

Ensembl Gene ID:

ENSAPLG00000014395

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015038

82472084 - 82663824

191741