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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82543791_82550170_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82543791 - 82550170
Intron Length:
6380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCACTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATTCACT
Flanking Amino Acid:
RADLRAYYDEAIHSVAWHHE
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
81.4
0.71
0.8
73.2
37.1
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
64.4
0.54
2.1
84.99
41.5

Associated Gene:

Gene:
STXBP5L
Ensembl Gene ID:
ENSAPLG00000014395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015038
82472084 - 82663824
191741