About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82557168_82568906_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82557168 - 82568906
Intron Length:
11739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
TTTTATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGATTTTTATTT
Flanking Amino Acid:
YVIMWNKAIELSTKTHPGPV
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.1
68.4
36.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.9
0.96
0.7
88.5
28.1
Minor 5ss
35.9
-1.6
3.2
51.5
44.9
Minor BPS
58.8
0.35
1.5
72.71
38.8

Associated Gene:

Gene:
STXBP5L
Ensembl Gene ID:
ENSAPLG00000014395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015038
82472084 - 82663824
191741