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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82569042_82590520_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82569042 - 82590520
Intron Length:
21479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAG
U12 Branch Point Sequence:
TTTTCCTTTACA
Flanking Amino Acid:
ILHSLKFNRERITYCHLPFQ
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
72.1
39.5
Major BPS
60.8
0.27
1.6
71.4
45.1
Major PPT
92.9
0.96
0.6
87.9
22.2
Minor 5ss
36
-1.6
3.2
49.3
46.4
Minor BPS
83.6
1.05
1.4
91.85
28.4

Associated Gene:

Gene:
STXBP5L
Ensembl Gene ID:
ENSAPLG00000014395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015038
82472084 - 82663824
191741