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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82590622_82592586_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82590622 - 82592586
Intron Length:
1965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTGCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGACAT
U12 Branch Point Sequence:
TGTGCCATATTT
Flanking Amino Acid:
VLQLQFLINEGALVSASADD
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.15
0.6
96.2
11.9
Major BPS
49.9
-0
1.4
60.7
45.9
Major PPT
67.5
0.4
1
58.7
43
Minor 5ss
39.3
-1.2
2.8
50.9
45.5
Minor BPS
50.3
0.09
2
73.58
43.4

Associated Gene:

Gene:
STXBP5L
Ensembl Gene ID:
ENSAPLG00000014395
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015038
82472084 - 82663824
191741