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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82743922_82744090_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82743922 - 82744090
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTA
Flanking Amino Acid:
RVKVLALGDPGVGKSSLVHL
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
66.2
39.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.4
0.75
0.9
80.8
36.8
Minor 5ss
28
-2.5
3
33.4
41.6
Minor BPS
59.9
0.31
1.8
75.92
35.5

Associated Gene:

Gene:
RABL3
Ensembl Gene ID:
ENSAPLG00000006732
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036811
82743876 - 82751923
8048
ENSAPLT00000006991
82743876 - 82754421
10546