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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82748305_82750064_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82748305 - 82750064
Intron Length:
1760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCCTTCAACA
Flanking Amino Acid:
VAPTGVLVTNGDYDREQFAD
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
32.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81
0.7
0.8
77.5
29.8
Minor 5ss
26.1
-2.7
2.9
22.6
37.5
Minor BPS
71
0.66
1.5
81.34
33.6

Associated Gene:

Gene:
RABL3
Ensembl Gene ID:
ENSAPLG00000006732
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036811
82743876 - 82751923
8048
ENSAPLT00000006991
82743876 - 82754421
10546