About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82750216_82751174_F


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
82750216 - 82751174

Intron Length:
959

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TTG|GTCAGTATC

5'SS Class:
major

3'SS Sequence:
TTGTTGGTTCTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CATTGAT

U12 Branch Point Sequence:
CTTGCATTGATT

Flanking Amino Acid:
EDFNAEEINLDCTNPRYLAA

Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
75.7
0.61
1.3
77.9
36.8

Major BPS
76.2
0.65
1
67
39.8

Major PPT
73.8
0.54
1
65.8
45.3

Minor 5ss
35.9
-1.6
2.7
43.6
37.6

Minor BPS
57.9
0.33
1.8
75.82
41.5

Associated Gene:

Gene:
RABL3

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

82743876 - 82751923
8048

82743876 - 82754421
10546