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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82764195_82768145_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82764195 - 82768145
Intron Length:
3951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GTTTTCAAAAGC
Flanking Amino Acid:
MLGLKYMSGFGNEHV
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
86.4
0.82
0.8
80.8
36.4
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
46.6
-0.2
2.1
63.35
42.2

Associated Gene:

Gene:
HGD
Ensembl Gene ID:
ENSAPLG00000006938
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007234
82764180 - 82785030
20851