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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82772870_82773240_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82772870 - 82773240
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGGGAC
5'SS Class:
major
3'SS Sequence:
TCTTTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTTTTTTGACA
Flanking Amino Acid:
IFVCNTSMLDRCLYNSDGDF
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.3
67.4
38.4
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
89
0.88
0.6
89
20.3
Minor 5ss
24.9
-2.9
3.3
32
42.8
Minor BPS
79.3
0.92
1
85.48
26.3

Associated Gene:

Gene:
HGD
Ensembl Gene ID:
ENSAPLG00000006938
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019879
82768146 - 82785030
16885
ENSAPLT00000007234
82764180 - 82785030
20851