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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82776545_82777118_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82776545 - 82777118
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTGCCTTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
ATTGCCTTGATA
Flanking Amino Acid:
YQGKLFAAQQDFSPFNVVAW
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
66.3
0.37
1
61.9
39.4
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
71.3
0.66
1.3
76.33
34.8

Associated Gene:

Gene:
HGD
Ensembl Gene ID:
ENSAPLG00000006938
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019879
82768146 - 82785030
16885
ENSAPLT00000007234
82764180 - 82785030
20851