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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82784383_82786005_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82784383 - 82786005
Intron Length:
1623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CTCTCTTCCACA
Flanking Amino Acid:
FWMAAFKIERDRKEKLIREG
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.8
43.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
80.4
0.68
0.7
75.4
26.8
Minor 5ss
31.9
-2.1
2.9
33
41.8
Minor BPS
49.2
-0
2
62.68
44.2

Associated Gene:

Gene:
NDUFB4
Ensembl Gene ID:
ENSAPLG00000017845
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033671
82784323 - 82786606
2284