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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82848772_82849523_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82848772 - 82849523
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTGCG
5'SS Class:
major
3'SS Sequence:
TCTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCACAA
U12 Branch Point Sequence:
GCAGCCACAAGG
Flanking Amino Acid:
NWVCTAMTCEEKVWLDNAKP
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.3
62.4
42.4
Major BPS
45.3
-0.2
1.1
48.9
36.6
Major PPT
93.5
0.98
0.6
92.3
18.1
Minor 5ss
34.5
-1.8
2.9
41.8
44.9
Minor BPS
38.8
-0.9
2
38.09
44.2

Associated Gene:

Gene:
FSTL1
Ensembl Gene ID:
ENSAPLG00000027059
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018023
82846091 - 82851724
5634