About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82855263_82860492_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82855263 - 82860492
Intron Length:
5230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATCG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTAAT
U12 Branch Point Sequence:
AATGAGGTGACG
Flanking Amino Acid:
GIPPDIQELRSLEFLYLGGN
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
71.2
35.2
Major BPS
74.6
0.61
1.1
75.5
35.1
Major PPT
92.7
0.96
0.6
91.8
19.2
Minor 5ss
32.8
-2
3
39.2
46.2
Minor BPS
35.4
-1.2
2.6
42.21
42.8

Associated Gene:

Gene:
LRRC58
Ensembl Gene ID:
ENSAPLG00000029420
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044554
82854778 - 82864796
10019