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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82860622_82861781_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
82860622 - 82861781
Intron Length:
1160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTTCCATCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
ATGTCCTGATGG
Flanking Amino Acid:
KIQSIPPQLAQLHSLRSLSL
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
75.4
34.4
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
80.1
0.68
0.8
77.9
29.6
Minor 5ss
37
-1.5
2.9
51.4
39.2
Minor BPS
46.8
-0.3
2.1
54.53
46.3

Associated Gene:

Gene:
LRRC58
Ensembl Gene ID:
ENSAPLG00000029420
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044554
82854778 - 82864796
10019