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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82862060_82863587_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82862060 - 82863587
Intron Length:
1528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTTCG
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GCCTTCTGATGT
Flanking Amino Acid:
ASNCPNPKCGGVYFDSCVRQ
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
72.7
39.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
79.2
0.66
0.8
69.6
36.7
Minor 5ss
41
-1
2.7
51.6
44.8
Minor BPS
44.1
-0.3
1.9
56.47
46

Associated Gene:

Gene:
LRRC58
Ensembl Gene ID:
ENSAPLG00000029420
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044554
82854778 - 82864796
10019