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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82940018_82965753_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82940018 - 82965753
Intron Length:
25736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTATTTTAATT
Flanking Amino Acid:
LLFNATSIMAGDKDGSKVTT
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
72.3
33.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.8
0.69
0.8
72.6
37.5
Minor 5ss
36.5
-1.5
2.8
45.9
42.3
Minor BPS
70.3
0.71
1.2
80.77
35.1

Associated Gene:

Gene:
GSK3B
Ensembl Gene ID:
ENSAPLG00000007990
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041100
82939972 - 83044861
104890
ENSAPLT00000032398
82939972 - 83045325
105354
ENSAPLT00000008328
82939972 - 83045325
105354