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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82965948_82988455_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82965948 - 82988455
Intron Length:
22508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTTCCTAATT
Flanking Amino Acid:
KKVLQDKRFKNRELQIMRKL
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
100
1.24
0.5
100
0
Major PPT
90.2
0.91
0.7
88.4
28.3
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
68.6
0.66
1.6
85.16
35

Associated Gene:

Gene:
GSK3B
Ensembl Gene ID:
ENSAPLG00000007990
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019455
82965314 - 83045021
79708
ENSAPLT00000041100
82939972 - 83044861
104890
ENSAPLT00000008328
82939972 - 83045325
105354
ENSAPLT00000040118
82965717 - 83046176
80460
ENSAPLT00000035357
82949020 - 83045326
96307
ENSAPLT00000032398
82939972 - 83045325
105354