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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83002358_83004206_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83002358 - 83004206
Intron Length:
1849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTACTA
Flanking Amino Acid:
TAVLKLCDFGSAKQLVRGEP
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.9
0.72
0.8
78.3
30.6
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
58.4
0.26
1.9
72.1
40.4

Associated Gene:

Gene:
GSK3B
Ensembl Gene ID:
ENSAPLG00000007990
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035357
82949020 - 83045326
96307
ENSAPLT00000032398
82939972 - 83045325
105354
ENSAPLT00000019455
82965314 - 83045021
79708
ENSAPLT00000041100
82939972 - 83044861
104890
ENSAPLT00000008328
82939972 - 83045325
105354
ENSAPLT00000040118
82965717 - 83046176
80460