About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83004314_83013151_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83004314 - 83013151
Intron Length:
8838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCCCCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
CTTCCCTTGTCC
Flanking Amino Acid:
FGATDYTSSIDVWSAGCVLA
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.7
90.9
28.7
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
82.5
0.73
0.7
79.8
25.6
Minor 5ss
39.3
-1.2
2.8
50.6
45.9
Minor BPS
46.6
-0.2
3.5
71.26
40.4

Associated Gene:

Gene:
GSK3B
Ensembl Gene ID:
ENSAPLG00000007990
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035357
82949020 - 83045326
96307
ENSAPLT00000032398
82939972 - 83045325
105354
ENSAPLT00000019455
82965314 - 83045021
79708
ENSAPLT00000041100
82939972 - 83044861
104890
ENSAPLT00000008328
82939972 - 83045325
105354
ENSAPLT00000040118
82965717 - 83046176
80460