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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83023260_83032120_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83023260 - 83032120
Intron Length:
8861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTATCATCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
GATTATTTCACT
Flanking Amino Acid:
PQIKAHPWTKDSSGTGHFTS
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
77.2
0.61
0.8
75.1
34.6
Minor 5ss
32.4
-2
3
40.7
45.5
Minor BPS
54.9
0.24
1.9
74.93
41.5

Associated Gene:

Gene:
GSK3B
Ensembl Gene ID:
ENSAPLG00000007990
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032398
82939972 - 83045325
105354
ENSAPLT00000019455
82965314 - 83045021
79708
ENSAPLT00000041100
82939972 - 83044861
104890
ENSAPLT00000040118
82965717 - 83046176
80460
ENSAPLT00000035357
82949020 - 83045326
96307