About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83032160_83034537_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83032160 - 83034537
Intron Length:
2378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
GTGHFTSGVRVFRPRTPPEA
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
77.1
37.8
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
44
-0.6
2.5
52.7
44
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
GSK3B
Ensembl Gene ID:
ENSAPLG00000007990
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035357
82949020 - 83045326
96307
ENSAPLT00000032398
82939972 - 83045325
105354
ENSAPLT00000019455
82965314 - 83045021
79708
ENSAPLT00000041100
82939972 - 83044861
104890
ENSAPLT00000040118
82965717 - 83046176
80460