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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83034725_83044793_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
83034725 - 83044793
Intron Length:
10069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCCTGT
5'SS Class:
weak_major
3'SS Sequence:
CTGTCATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TTGCCTGTCATT
Flanking Amino Acid:
KPALFNFTTQDVNAGERVQT
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.3
60.6
46.7
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
79.5
0.66
0.9
73.3
36
Minor 5ss
49.7
-0
3
73.6
43
Minor BPS
45.5
-0.2
2.3
68.43
43.4

Associated Gene:

Gene:
GSK3B
Ensembl Gene ID:
ENSAPLG00000007990
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041100
82939972 - 83044861
104890