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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83040393_83044793_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83040393 - 83044793
Intron Length:
4401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAACG
5'SS Class:
strong_major
3'SS Sequence:
CTGTCATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TTGCCTGTCATT
Flanking Amino Acid:
STPTNATAASDVNAGERVQT
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
74.2
36.1
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
79.5
0.66
0.9
73.3
36
Minor 5ss
28.3
-2.5
2.7
32
42.1
Minor BPS
45.5
-0.2
2.3
68.43
43.4

Associated Gene:

Gene:
GSK3B
Ensembl Gene ID:
ENSAPLG00000007990
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032398
82939972 - 83045325
105354
ENSAPLT00000019455
82965314 - 83045021
79708
ENSAPLT00000008328
82939972 - 83045325
105354
ENSAPLT00000040118
82965717 - 83046176
80460
ENSAPLT00000035357
82949020 - 83045326
96307