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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83057847_83059077_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83057847 - 83059077
Intron Length:
1231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTTCT
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTTCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AAAATACTAATA
Flanking Amino Acid:
INDIAYEMESCRTHLQSEEI
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
75.9
34
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
76.3
0.59
0.8
74
36.1
Minor 5ss
49.1
-0.1
2.4
64.8
41.7
Minor BPS
43.6
-0.4
1.8
50.71
33.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011017
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011469
83053979 - 83085062
31084