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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83063498_83064972_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
83063498 - 83064972
Intron Length:
1475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATTTTGT
5'SS Class:
major
3'SS Sequence:
CTCTATTTAAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTCTATTTAAAA
Flanking Amino Acid:
LLRGRAIQNLMFEEKEKRME
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
66
40
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
65.3
0.34
1.1
67.2
36.8
Minor 5ss
48.2
-0.2
2.5
64.7
41.7
Minor BPS
57
0.21
1.6
65.09
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011017
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011469
83053979 - 83085062
31084