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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83075282_83075539_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83075282 - 83075539
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
GTTTCCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
ACTTCTTAAATT
Flanking Amino Acid:
MKKIQHDFVLMLRKLIAKRK
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
66.4
45.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
81.6
0.71
0.8
73.8
36.8
Minor 5ss
39.1
-1.2
3
46.9
42.4
Minor BPS
64.6
0.54
1.6
77.48
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011017
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011469
83053979 - 83085062
31084