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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83075698_83076019_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83075698 - 83076019
Intron Length:
322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGAGTC
5'SS Class:
major
3'SS Sequence:
CTTTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AGTGCTTTAAAT
Flanking Amino Acid:
EWAFREQEIEKLQEIRLRVL
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
67.1
38.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
89.9
0.9
0.6
84.8
22.8
Minor 5ss
35.3
-1.7
3.8
49.9
41.1
Minor BPS
64.4
0.53
1.5
76.37
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011017
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011469
83053979 - 83085062
31084