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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83077053_83077923_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83077053 - 83077923
Intron Length:
871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CATTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGCAT
U12 Branch Point Sequence:
TCTTCCATATTG
Flanking Amino Acid:
LPPNVCYATEMIDPFILSAT
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.5
28.5
Major BPS
66.2
0.4
1.4
77.4
37.3
Major PPT
87.1
0.84
0.7
84.7
29.7
Minor 5ss
40.8
-1
2.8
57.5
39.6
Minor BPS
53.6
-0
2
64.01
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011017
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011469
83053979 - 83085062
31084