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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83077981_83079489_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83077981 - 83079489
Intron Length:
1509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAC
U12 Branch Point Sequence:
GTTGTCTTACCT
Flanking Amino Acid:
SGRNRYKYFARPLIPSNMLL
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
63.8
0.34
1.2
57.4
41.4
Major PPT
89.8
0.9
0.6
88
21.8
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
63
0.49
1.7
79.89
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011017
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011469
83053979 - 83085062
31084