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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83079574_83082295_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83079574 - 83082295
Intron Length:
2722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TTCTGACTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GTATTCTGACTT
Flanking Amino Acid:
QRLEALQQLALGQPSLQIPP
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
80
32.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
80.3
0.68
0.9
73.7
35.8
Minor 5ss
41.2
-1
3.4
64.1
41.5
Minor BPS
51.9
0.14
1.7
70.06
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011017
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011469
83053979 - 83085062
31084