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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83082454_83084471_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
83082454 - 83084471
Intron Length:
2018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ACACAAACGCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTAAAT
U12 Branch Point Sequence:
AATCACTGATTC
Flanking Amino Acid:
ANIQLIGDKLVKVPIFTSMF
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
77.9
36.8
Major BPS
61
0.27
1.1
67.3
35.2
Major PPT
47.5
-0.1
1
34
34.9
Minor 5ss
37.4
-1.4
3.6
54.1
45.6
Minor BPS
44.9
-0.4
1.8
53.98
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011017
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011469
83053979 - 83085062
31084