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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83084543_83085028_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
83084543 - 83085028
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACCGGCA
5'SS Class:
weak_major
3'SS Sequence:
CCTTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTGAC
U12 Branch Point Sequence:
CCGTATGTGACC
Flanking Amino Acid:
AAGRPLDCLYDPLYTLSSEK
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.7
0.16
1.3
49.1
41.8
Major BPS
62.5
0.31
1.2
54.8
42.1
Major PPT
83.4
0.75
0.8
80.3
31.8
Minor 5ss
34.5
-1.8
3.7
47.2
48.3
Minor BPS
43
-0.5
2.1
49.37
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011017
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011469
83053979 - 83085062
31084