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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83097245_83098744_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83097245 - 83098744
Intron Length:
1500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
TCTTGTTGAACA
Flanking Amino Acid:
CPDTKKARDACIIEKGEENC
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
58.2
0.25
1.9
71.68
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011097
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011542
83097126 - 83098829
1704