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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83115414_83116336_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83115414 - 83116336
Intron Length:
923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
ACAGCCTGACTT
Flanking Amino Acid:
FCAAPLPLNKNRTMFCLPGN
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
74.9
0.56
0.8
68.4
32
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
46.8
-0.1
1.8
59.68
44

Associated Gene:

Gene:
PLA1A
Ensembl Gene ID:
ENSAPLG00000025714
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017989
83115214 - 83130203
14990