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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83116502_83119380_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83116502 - 83119380
Intron Length:
2879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTGAC
5'SS Class:
major
3'SS Sequence:
CCCTGCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAA
U12 Branch Point Sequence:
GCTGACTGAACA
Flanking Amino Acid:
NSIKDTTKITIPQQEEVGKR
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
73.9
29.8
Major BPS
56.6
0.16
1.2
49.3
38
Major PPT
75.6
0.58
0.8
68.4
31.9
Minor 5ss
30
-2.3
3.2
39
39.9
Minor BPS
51
0.03
1.8
62.11
43.6

Associated Gene:

Gene:
PLA1A
Ensembl Gene ID:
ENSAPLG00000025714
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017989
83115214 - 83130203
14990