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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83119490_83119834_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83119490 - 83119834
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
GCCTCTTGCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
AAGCCACTCACT
Flanking Amino Acid:
LMTSPSAPFCVHHSLVEFRL
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.8
83.2
28.5
Major BPS
64.9
0.37
1
67
29.8
Major PPT
69.8
0.45
0.9
68
37.6
Minor 5ss
36.2
-1.6
2.7
42.6
38.5
Minor BPS
42
-0.5
2.2
59.49
42.9

Associated Gene:

Gene:
PLA1A
Ensembl Gene ID:
ENSAPLG00000025714
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017989
83115214 - 83130203
14990