About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83120973_83121672_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83120973 - 83121672
Intron Length:
700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
TTCTTCTTACAG
Flanking Amino Acid:
QPGCPRFISAGYKYLICDHM
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
92.6
0.96
0.6
87.8
22.4
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
56.3
0.06
1.8
63.72
44.3

Associated Gene:

Gene:
PLA1A
Ensembl Gene ID:
ENSAPLG00000025714
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017989
83115214 - 83130203
14990