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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83122680_83125470_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
83122680 - 83125470
Intron Length:
2791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCATCA
5'SS Class:
weak_major
3'SS Sequence:
GATTTCGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CATCCTTTGATT
Flanking Amino Acid:
FHGGQLGRITGLDPAGPKYT
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.2
64
36.8
Major BPS
84
0.85
0.9
75
39.9
Major PPT
76.6
0.6
1
69.6
41.2
Minor 5ss
49.9
-0
2.5
66.2
44.7
Minor BPS
63.8
0.52
1.2
72.94
38.4

Associated Gene:

Gene:
PLA1A
Ensembl Gene ID:
ENSAPLG00000025714
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017989
83115214 - 83130203
14990