Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83125580_83126800_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

83125580 - 83126800

Intron Length:

1221

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGCTCC

5'SS Class:

strong_major

3'SS Sequence:

CATCGATCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTGAT

U12 Branch Point Sequence:

GTATCATCGATC

Flanking Amino Acid:

SISRFISKLLALGVSGTSIH

Intron Amino Acid Position:

152

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

68.5

37.5

Major BPS

83.5

0.83

0.8

71.6

36.4

Major PPT

70.4

0.46

0.9

62.4

38.4

Minor 5ss

45.3

-0.5

2.8

57.3

41.5

Minor BPS

48.5

-0.1

1.8

60.95

38.1

Associated Gene:

Gene:

PLA1A

Ensembl Gene ID:

ENSAPLG00000025714

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017989

83115214 - 83130203

14990