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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83126979_83128226_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83126979 - 83128226
Intron Length:
1248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
GATGACTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTCTGATGACT
Flanking Amino Acid:
LETKIIIHGFRALGTKPSWI
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
26.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
64.2
0.32
1
58.8
42.4
Minor 5ss
24.3
-3
3.1
28.7
43.6
Minor BPS
48.1
-0
2.3
77.32
39.1

Associated Gene:

Gene:
PLA1A
Ensembl Gene ID:
ENSAPLG00000025714
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017989
83115214 - 83130203
14990