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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83128429_83130130_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83128429 - 83130130
Intron Length:
1702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CGCTTCTCACCC
Flanking Amino Acid:
VILLLSSAQAGNANRTSWHQ
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
76.3
0.59
0.8
69.4
29.6
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
47.1
-0.2
1.8
54.33
43.9

Associated Gene:

Gene:
PLA1A
Ensembl Gene ID:
ENSAPLG00000025714
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017989
83115214 - 83130203
14990