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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83137845_83139985_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83137845 - 83139985
Intron Length:
2141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAACTT
5'SS Class:
major
3'SS Sequence:
TTTTCCCCTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TTTTCCCCTATA
Flanking Amino Acid:
FWIRSCPEFKAHIYCEEKVF
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
68.8
42.1
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
83.1
0.74
0.7
77.9
24.2
Minor 5ss
36.8
-1.5
3.4
48.6
47
Minor BPS
49.5
-0
2.2
72.64
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011249
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019463
83134133 - 83145738
11606
ENSAPLT00000011717
83134133 - 83146006
11874
ENSAPLT00000028873
83137102 - 83145738
8637