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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83140289_83140932_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83140289 - 83140932
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
AGTAATACAACA
Flanking Amino Acid:
GVFTFKLTVLDPPSEPQINC
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.7
90.9
28.7
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
87.1
0.84
0.7
84.7
23
Minor 5ss
39.3
-1.2
2.8
50.6
45.9
Minor BPS
42.9
-0.5
1.9
54.17
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011249
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029608
83134116 - 83145738
11623
ENSAPLT00000028873
83137102 - 83145738
8637
ENSAPLT00000019463
83134133 - 83145738
11606
ENSAPLT00000011717
83134133 - 83146006
11874
ENSAPLT00000030263
83134116 - 83145738
11623