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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83141185_83142065_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83141185 - 83142065
Intron Length:
881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGGT
5'SS Class:
major
3'SS Sequence:
TGCTTTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTTAACTAATC
Flanking Amino Acid:
TLDQCSPTYQGYSSPKRSRP
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
69.7
40.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
76.6
0.6
1
77.8
34.4
Minor 5ss
31
-2.2
3.6
47.4
48
Minor BPS
52
0.04
2.1
73.72
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011249
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019463
83134133 - 83145738
11606
ENSAPLT00000011717
83134133 - 83146006
11874
ENSAPLT00000030263
83134116 - 83145738
11623
ENSAPLT00000028873
83137102 - 83145738
8637