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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83141185_83142980_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83141185 - 83142980
Intron Length:
1796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGGT
5'SS Class:
major
3'SS Sequence:
TTTTTGGGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCAGAT
U12 Branch Point Sequence:
ATCTCCAGATAT
Flanking Amino Acid:
TLDQCSPTYQEKANCGTGGA
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
69.7
40.9
Major BPS
61.5
0.29
1.1
56.9
40.5
Major PPT
77.7
0.62
1
72.9
42.2
Minor 5ss
31
-2.2
3.6
47.4
48
Minor BPS
45.1
-0.2
2
65.91
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011249
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029608
83134116 - 83145738
11623