About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83143029_83143243_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83143029 - 83143243
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTATTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATATTTTATTA
Flanking Amino Acid:
TGGADQTNAAGTDHHLLGDN
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.6
0.73
0.8
77.9
34.9
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
54.1
0.12
1.5
64.41
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011249
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029608
83134116 - 83145738
11623
ENSAPLT00000028873
83137102 - 83145738
8637
ENSAPLT00000019463
83134133 - 83145738
11606
ENSAPLT00000011717
83134133 - 83146006
11874
ENSAPLT00000030263
83134116 - 83145738
11623