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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83145560_83145893_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83145560 - 83145893
Intron Length:
334

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTGGCCTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
GGTTTCTGAGTG
Flanking Amino Acid:
SDTVEKETEGASGRGHEDTV
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
79.5
0.66
0.9
73.2
37.1
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
48.2
-0.2
1.7
53.63
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011249
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011717
83134133 - 83146006
11874