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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83196108_83196492_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
83196108 - 83196492
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCCTTTTATCT
Flanking Amino Acid:
RKLIIRRNPGGWVEKETYY*
Intron Amino Acid Position:
1177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
77.2
37.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85.2
0.79
0.7
78.1
36.1
Minor 5ss
37.2
-1.4
3
46.5
42.8
Minor BPS
60.1
0.4
1.6
76.38
40.7

Associated Gene:

Gene:
ATP1A1
Ensembl Gene ID:
ENSAPLG00000011285
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011885
83196079 - 83220297
24219