About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_83197627_83198197_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
83197627 - 83198197
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
TTGAGCCTGACT
Flanking Amino Acid:
RRNSVFQQGMKNKILIFGLF
Intron Amino Acid Position:
1112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.5
40.6
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
74.3
0.55
0.9
74.7
34.9
Minor 5ss
36.8
-1.5
2.7
42.8
38.2
Minor BPS
48.4
-0
2.2
72.8
44.1

Associated Gene:

Gene:
ATP1A1
Ensembl Gene ID:
ENSAPLG00000011285
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011885
83196079 - 83220297
24219